RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

dcuA.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
dcuA.5UTR EG11225.5UTR 5UTR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 22 0.00 -1.00 6
Stat. Phase (Melamed et al. 2016) 2 56 0.00 -0.50 6
Iron Limitation (Melamed et al. 2016) 1 389 1.00 0.00 6

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
fnrS sRNA Show interaction
ryhB sRNA Show interaction
ryjB.sgcQ.IGR IGR Show interaction Show interaction