RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

fnrS

Summary:

Name ID Genomic annotation Chromosome Strand
fnrS G0-10677 sRNA chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 50 22068 0.62 0.60 8
Stat. Phase (Melamed et al. 2016) 28 10118 0.57 0.54 8
Iron Limitation (Melamed et al. 2016) 48 12800 0.67 0.65 8

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
G0-10697 ncRNA Show interaction
aceA CDS Show interaction
aceB.aceA.IGT IGT Show interaction
ahpF CDS Show interaction Show interaction Show interaction
chaA CDS Show interaction
cspF.cspB.IGR IGR Show interaction
cspG CDS Show interaction
dcrB CDS Show interaction Show interaction Show interaction
dcuA.5UTR 5UTR Show interaction
dinI.EST3UTR 3UTR Show interaction Show interaction Show interaction
dmsA CDS Show interaction
dmsA.5UTR 5UTR Show interaction
fabI CDS Show interaction
fadM CDS Show interaction
fdnG CDS Show interaction
fiu.5UTR 5UTR Show interaction
flxA CDS Show interaction Show interaction
fnr CDS Show interaction
folX CDS Show interaction Show interaction Show interaction
gcvT CDS Show interaction Show interaction
gcvT.ubiI.IGR IGR Show interaction
ghrA CDS Show interaction Show interaction
glf CDS Show interaction
glpD CDS Show interaction
gltA CDS Show interaction Show interaction Show interaction
gpmA.5UTR 5UTR Show interaction Show interaction
grxD CDS Show interaction
grxD.5UTR 5UTR Show interaction Show interaction Show interaction
hflK CDS Show interaction
hflX.hflK.IGT IGT Show interaction Show interaction
hisR.leuT.IGT_AS AS Show interaction
hmp CDS Show interaction Show interaction
hupB.5UTR 5UTR Show interaction
hypA CDS Show interaction
iscR CDS Show interaction
iscR.5UTR 5UTR Show interaction Show interaction Show interaction
leuT.AS AS Show interaction
lldP.5UTR 5UTR Show interaction Show interaction
maeA CDS Show interaction Show interaction Show interaction
malI CDS Show interaction
malI.5UTR 5UTR Show interaction
malK CDS Show interaction
malK.5UTR 5UTR Show interaction
marA CDS Show interaction Show interaction
marA.marB.IGT IGT Show interaction
marB CDS Show interaction
marR CDS Show interaction Show interaction Show interaction
metK.galP.IGR IGR Show interaction
nudL CDS Show interaction Show interaction
pspA CDS Show interaction
pspA.pspB.IGT IGT Show interaction
queE CDS Show interaction
rcsB.EST3UTR 3UTR Show interaction
rfbX CDS Show interaction
sodB.5UTR 5UTR Show interaction Show interaction
sucB CDS Show interaction
sucB.3UTR 3UTR Show interaction
sucC CDS Show interaction
tdcG.yhaO.IGR IGR Show interaction Show interaction Show interaction
tnaA CDS Show interaction Show interaction
trmJ CDS Show interaction Show interaction Show interaction
tsaC CDS Show interaction Show interaction Show interaction
uspA.5UTR 5UTR Show interaction Show interaction
waaL.AS AS Show interaction Show interaction
ybfA CDS Show interaction
ycaO CDS Show interaction
ydcS CDS Show interaction
ydcS.5UTR 5UTR Show interaction
ydfT CDS Show interaction
yfdI CDS Show interaction
yhbU CDS Show interaction
yidE.ibpB.IGR IGR Show interaction
yieP CDS Show interaction
yihX CDS Show interaction
yjbB.5UTR 5UTR Show interaction Show interaction Show interaction
yjjZ CDS Show interaction Show interaction
yobA CDS Show interaction Show interaction Show interaction
yrdD CDS Show interaction Show interaction Show interaction
ysaA CDS Show interaction
ytfJ CDS Show interaction Show interaction
ytfJ.5UTR 5UTR Show interaction
ytfK CDS Show interaction Show interaction Show interaction
zwf CDS Show interaction
zwf.5UTR 5UTR Show interaction