RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

tdcG.yhaO.IGR

Flanking gene IDs:

  • G7624
  • EG12754

Summary:

Name ID Genomic annotation Chromosome Strand
tdcG.yhaO.IGR G7624.EG12754.IGR IGR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 1611 1.00 0.00 4
Stat. Phase (Melamed et al. 2016) 1 39 1.00 0.00 3
Iron Limitation (Melamed et al. 2016) 1 1891 1.00 0.00 8

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
fnrS sRNA Show interaction Show interaction Show interaction