RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

yieP

Summary:

Name ID Genomic annotation Chromosome Strand
yieP EG11733 CDS chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 35 0.00 -1.00 4
Stat. Phase (Melamed et al. 2016) 3 129 0.00 -0.33 6
Iron Limitation (Melamed et al. 2016) 3 138 0.33 0.00 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cpxP.3UTR 3UTR Show interaction Show interaction Show interaction
cyaR sRNA Show interaction
fnrS sRNA Show interaction
ryhB sRNA Show interaction
xylB.xylA.IGT IGT Show interaction