RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

zwf

Summary:

Name ID Genomic annotation Chromosome Strand
zwf EG11221 CDS chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 40 1.00 0.00 4
Stat. Phase (Melamed et al. 2016) 1 111 0.00 -1.00 5
Iron Limitation (Melamed et al. 2016) 1 42 0.00 -1.00 3

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cyaR sRNA Show interaction Show interaction
fnrS sRNA Show interaction