RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

fnrS - trmJ interactions in library 'Stationary Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
trmJ fnrS CDS sRNA chr - 2663302 2663348 chr + 1409154 1409249 42 11.3
fnrS trmJ sRNA CDS chr + 1409127 1409171 chr - 2663290 2663319 115 325.8
fnrS trmJ sRNA CDS chr + 1409178 1409211 chr - 2663286 2663317 25 22.1

fnrS reads

trmJ reads