RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

fnrS - gpmA.5UTR interactions in library 'Exponential Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
gpmA.5UTR fnrS 5UTR sRNA chr - 787587 787654 chr + 1409156 1409249 48 3.3
fnrS gpmA.5UTR sRNA 5UTR chr + 1409128 1409168 chr - 787583 787648 84 33.0

fnrS reads

gpmA.5UTR reads