RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

dinI.EST3UTR

Summary:

Name ID Genomic annotation Chromosome Strand
dinI.EST3UTR G6558.EST3UTR 3UTR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 2 297 1.00 0.50 8
Stat. Phase (Melamed et al. 2016) 1 53 1.00 0.00 8
Iron Limitation (Melamed et al. 2016) 1 126 1.00 0.00 8

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
fnrS sRNA Show interaction Show interaction Show interaction
pnp CDS Show interaction