RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

ghrA

Summary:

Name ID Genomic annotation Chromosome Strand
ghrA G6539 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 119 1.00 0.00 7
Stat. Phase (Melamed et al. 2016) 1 13 0.00 -1.00 7
Iron Limitation (Melamed et al. 2016) 1 26 1.00 0.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
fnrS sRNA Show interaction Show interaction
sdsR sRNA Show interaction