RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

sodB.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
sodB.5UTR EG10954.5UTR 5UTR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 2 405 0.00 -0.50 4
Stat. Phase (Melamed et al. 2016) 1 62 0.00 -1.00 4
Iron Limitation (Melamed et al. 2016) 1 109 1.00 0.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cspE CDS Show interaction
fnrS sRNA Show interaction Show interaction
ryhB sRNA Show interaction