RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

yihX

Summary:

Name ID Genomic annotation Chromosome Strand
yihX EG11850 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 2 50 0.00 -0.50 3
Stat. Phase (Melamed et al. 2016) 2 45 0.00 -0.50 4
Iron Limitation (Melamed et al. 2016) 2 84 0.00 -0.50 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
fnrS sRNA Show interaction
omrB sRNA Show interaction Show interaction Show interaction
ryhB sRNA Show interaction
sdsR sRNA Show interaction