RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

fnrS - gpmA.5UTR interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
gpmA.5UTR fnrS 5UTR sRNA chr - 787578 787654 chr + 1409152 1409249 105 9.2
fnrS gpmA.5UTR sRNA 5UTR chr + 1409128 1409173 chr - 787578 787601 78 147.5
fnrS gpmA.5UTR sRNA 5UTR chr + 1409183 1409193 chr - 787584 787601 13 10.5

fnrS reads

gpmA.5UTR reads