RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

lpd

Summary:

Name ID Genomic annotation Chromosome Strand
lpd EG10543 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 55 1.00 0.00 3
Stat. Phase (Melamed et al. 2016) 2 24 0.00 -0.50 4
Iron Limitation (Melamed et al. 2016) 2 152 0.50 0.00 3

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
rprA sRNA Show interaction
ryhB sRNA Show interaction
spf sRNA Show interaction Show interaction Show interaction