RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

fdhD.fdoG.IGR

Flanking gene IDs:

  • EG11859
  • EG11858

Summary:

Name ID Genomic annotation Chromosome Strand
fdhD.fdoG.IGR EG11859.EG11858.IGR IGR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 27 0.00 -1.00 3
Stat. Phase (Melamed et al. 2016) 2 3384 0.00 -0.50 4
Iron Limitation (Melamed et al. 2016) 1 51 0.00 -1.00 3

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arrS cASt Show interaction
rprA sRNA Show interaction Show interaction Show interaction