RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

rsmH

Summary:

Name ID Genomic annotation Chromosome Strand
rsmH EG11085 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 40 0.00 -1.00 4
Stat. Phase (Melamed et al. 2016) 2 256 0.00 -0.50 4
Iron Limitation (Melamed et al. 2016) 3 159 0.00 -0.33 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
ryhB sRNA Show interaction
sdsR sRNA Show interaction
spf sRNA Show interaction Show interaction
ybiJ.ybiC.IGR IGR Show interaction
yehA.EST3UTR 3UTR Show interaction