RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

yjgZ.insG.IGR

Flanking gene IDs:

  • G7899
  • G7900

Summary:

Name ID Genomic annotation Chromosome Strand
yjgZ.insG.IGR G7899.G7900.IGR IGR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 42 1.00 0.00 5
Stat. Phase (Melamed et al. 2016) 3 40 0.67 0.33 5
Iron Limitation (Melamed et al. 2016) 1 82 1.00 0.00 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
rpsJ.5UTR 5UTR Show interaction Show interaction Show interaction
sdsR sRNA Show interaction
truA CDS Show interaction