RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

gatZ

Summary:

Name ID Genomic annotation Chromosome Strand
gatZ G7128 CDS chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 61 0.00 -1.00 3
Stat. Phase (Melamed et al. 2016) 2 311 0.00 -0.50 4
Iron Limitation (Melamed et al. 2016) 2 427 0.00 -0.50 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arcZ sRNA Show interaction Show interaction
mgrR sRNA Show interaction Show interaction
ryhB sRNA Show interaction