RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

slyB.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
slyB.5UTR G6881.5UTR 5UTR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 24 0.00 -1.00 4
Stat. Phase (Melamed et al. 2016) 1 14 0.00 -1.00 5
Iron Limitation (Melamed et al. 2016) 2 86 0.50 0.00 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
mgrR sRNA Show interaction Show interaction
spf sRNA Show interaction Show interaction