RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

paaX

Summary:

Name ID Genomic annotation Chromosome Strand
paaX G6720 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 10 0.00 -1.00 3
Stat. Phase (Melamed et al. 2016) 1 207 0.00 -1.00 4
Iron Limitation (Melamed et al. 2016) 3 99 0.00 -0.33 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cpxP.3UTR 3UTR Show interaction Show interaction Show interaction
mgrR sRNA Show interaction
ryhB sRNA Show interaction