RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

ycbZ

Summary:

Name ID Genomic annotation Chromosome Strand
ycbZ G6493 CDS chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 100 1.00 0.00 3
Stat. Phase (Melamed et al. 2016) 2 105 0.00 -0.50 4
Iron Limitation (Melamed et al. 2016) 3 201 0.33 0.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cyaR sRNA Show interaction
dsrA sRNA Show interaction
mgrR sRNA Show interaction Show interaction Show interaction
omrB sRNA Show interaction