RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

soxS

Summary:

Name ID Genomic annotation Chromosome Strand
soxS EG10958 CDS chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 41 0.00 -1.00 3
Stat. Phase (Melamed et al. 2016) 2 695 0.00 -0.50 5
Iron Limitation (Melamed et al. 2016) 3 391 0.00 -0.33 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
gcvB sRNA Show interaction
mgrR sRNA Show interaction Show interaction Show interaction
narP.ccmH.IGR IGR Show interaction
yqiB CDS Show interaction