RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

cycA.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
cycA.5UTR EG12504.5UTR 5UTR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 252 0.00 -1.00 2
Stat. Phase (Melamed et al. 2016) 3 912 0.33 0.00 5
Iron Limitation (Melamed et al. 2016) 1 1420 0.00 -1.00 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cpxP.3UTR 3UTR Show interaction
gcvB sRNA Show interaction Show interaction Show interaction
mgrR sRNA Show interaction