RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

insA-7

Summary:

Name ID Genomic annotation Chromosome Strand
insA-7 G7908 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 184 0.00 -1.00 4
Stat. Phase (Melamed et al. 2016) 2 53 0.00 -0.50 4
Iron Limitation (Melamed et al. 2016) 1 166 0.00 -1.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cyaR sRNA Show interaction
mgrR sRNA Show interaction Show interaction Show interaction