RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

uhpT.EST3UTR - tnaA interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
tnaA uhpT.EST3UTR CDS 3UTR chr + 3889279 3889475 chr - 3845730 3845771 243 22.1
tnaA uhpT.EST3UTR CDS 3UTR chr + 3888479 3888977 chr - 3845731 3845756 263 6.4
tnaA uhpT.EST3UTR CDS 3UTR chr + 3888992 3889269 chr - 3845732 3845772 52 4.3

uhpT.EST3UTR reads

tnaA reads