RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

rpmI.infC.IGT

Flanking gene IDs:

  • EG11231
  • EG10506

Summary:

Name ID Genomic annotation Chromosome Strand
rpmI.infC.IGT EG11231.EG10506.IGT IGT chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 148 0.00 -1.00 3
Stat. Phase (Melamed et al. 2016) 1 12 0.00 -1.00 3
Iron Limitation (Melamed et al. 2016) 3 348 0.00 -0.33 3

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
ampG CDS Show interaction
mepS.5UTR 5UTR Show interaction
uhpT.EST3UTR 3UTR Show interaction Show interaction Show interaction