RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

thrU

Summary:

Name ID Genomic annotation Chromosome Strand
thrU EG30102 tRNA chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 2 473 0.50 0.00 6
Stat. Phase (Melamed et al. 2016) 2 680 0.00 -0.50 6
Iron Limitation (Melamed et al. 2016) 1 205 0.00 -1.00 6

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
chiX sRNA Show interaction
uhpT CDS Show interaction
uhpT.EST3UTR 3UTR Show interaction Show interaction Show interaction