RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

uhpT

Summary:

Name ID Genomic annotation Chromosome Strand
uhpT EG11054 CDS chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 28 1171 0.89 0.86 7
Stat. Phase (Melamed et al. 2016) 3 105 1.00 0.67 7
Iron Limitation (Melamed et al. 2016) 31 1298 0.94 0.90 7

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
bglX.5UTR 5UTR Show interaction
dcyD.5UTR 5UTR Show interaction Show interaction
def CDS Show interaction
dnaA CDS Show interaction
feoA.5UTR 5UTR Show interaction
fhuA CDS Show interaction
flgB CDS Show interaction
flgC CDS Show interaction
flgN CDS Show interaction
flhB CDS Show interaction
fliC CDS Show interaction Show interaction
fliF CDS Show interaction Show interaction
fliI CDS Show interaction Show interaction
ftsP CDS Show interaction
fusA.rpsG.IGT IGT Show interaction
galU CDS Show interaction
glcA.yghJ.IGR IGR Show interaction
glpK CDS Show interaction Show interaction Show interaction
glpX.glpK.IGT IGT Show interaction Show interaction
hsdR CDS Show interaction
insD-2.ynbG.IGR IGR Show interaction
lrhA CDS Show interaction Show interaction
mglB CDS Show interaction Show interaction
mlaF CDS Show interaction
moaC CDS Show interaction
nemA CDS Show interaction
pnp CDS Show interaction
pyrG CDS Show interaction
rmf CDS Show interaction
rplY CDS Show interaction
rpsG CDS Show interaction
rpsG.rpsL.IGT IGT Show interaction
sfsA CDS Show interaction
talB.5UTR 5UTR Show interaction Show interaction
thrU tRNA Show interaction
tnaB CDS Show interaction
udp CDS Show interaction
uspD CDS Show interaction
uspE CDS Show interaction
waaA CDS Show interaction
yaiL CDS Show interaction Show interaction
yeiP CDS Show interaction
yejL CDS Show interaction Show interaction
ygaH CDS Show interaction
yghJ.EST5UTR 5UTR Show interaction
ygiA CDS Show interaction Show interaction
ytfK CDS Show interaction
zapD CDS Show interaction
zipA CDS Show interaction