RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

glpX.glpK.IGT

Flanking gene IDs:

  • EG11517
  • EG10398

Summary:

Name ID Genomic annotation Chromosome Strand
glpX.glpK.IGT EG11517.EG10398.IGT IGT chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 22 1.00 0.00 3
Stat. Phase (Melamed et al. 2016) 1 51 0.00 -1.00 4
Iron Limitation (Melamed et al. 2016) 2 71 0.50 0.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
glpX.3UTR 3UTR Show interaction Show interaction
uhpT CDS Show interaction Show interaction