RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

yaiL

Summary:

Name ID Genomic annotation Chromosome Strand
yaiL G6207 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 19 0.00 -1.00 5
Stat. Phase (Melamed et al. 2016) 1 71 0.00 -1.00 2
Iron Limitation (Melamed et al. 2016) 2 72 0.00 -0.50 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cyaR sRNA Show interaction Show interaction
uhpT CDS Show interaction Show interaction