RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

chiX

Summary:

Name ID Genomic annotation Chromosome Strand
chiX G0-9382 sRNA chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 47374 1.00 0.00 7
Stat. Phase (Melamed et al. 2016) 27 44382 1.00 0.96 7
Iron Limitation (Melamed et al. 2016) 23 111459 0.96 0.91 7

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
G0-10697.oppA.IGR IGR Show interaction
argQ tRNA Show interaction
asnT tRNA Show interaction Show interaction
aspU tRNA Show interaction
bolA.5UTR 5UTR Show interaction
chbC.chbB.IGT IGT Show interaction Show interaction
chiP.5UTR 5UTR Show interaction Show interaction Show interaction
emrE CDS Show interaction
fabD CDS Show interaction
gltW tRNA Show interaction
glyT tRNA Show interaction
hupB.5UTR 5UTR Show interaction
ileV tRNA Show interaction
insL-1 CDS Show interaction
ldcA CDS Show interaction
leuP tRNA Show interaction Show interaction
leuT tRNA Show interaction
leuZ tRNA Show interaction
lysQ tRNA Show interaction
lysT tRNA Show interaction
metU tRNA Show interaction
minC CDS Show interaction
mreC CDS Show interaction
msyB CDS Show interaction
nadE.5UTR 5UTR Show interaction
pheV tRNA Show interaction
proQ CDS Show interaction Show interaction
proQ.EST5UTR 5UTR Show interaction
rplK.5UTR 5UTR Show interaction
serT tRNA Show interaction
tdcA CDS Show interaction
tdcA.5UTR 5UTR Show interaction
thrA.AS AS Show interaction
thrU tRNA Show interaction
thrV tRNA Show interaction
tmcA CDS Show interaction Show interaction
valT tRNA Show interaction
valU tRNA Show interaction
valW tRNA Show interaction
yciE.yciF.IGT IGT Show interaction
yfeH CDS Show interaction
yifL.yzcX.IGR IGR Show interaction
yjjJ.AS AS Show interaction Show interaction
yrbL.npr.IGR IGR Show interaction Show interaction