RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

metU

Summary:

Name ID Genomic annotation Chromosome Strand
metU EG30059 tRNA chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 14 0.00 -1.00 2
Stat. Phase (Melamed et al. 2016) 2 1757 0.00 -0.50 5
Iron Limitation (Melamed et al. 2016) 1 15 0.00 -1.00 2

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
chiX sRNA Show interaction
metT.asnB.IGR IGR Show interaction Show interaction Show interaction