RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

metT.asnB.IGR

Flanking gene IDs:

  • EG30058
  • EG10092

Summary:

Name ID Genomic annotation Chromosome Strand
metT.asnB.IGR EG30058.EG10092.IGR IGR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 14 1.00 0.00 5
Stat. Phase (Melamed et al. 2016) 1 25 1.00 0.00 8
Iron Limitation (Melamed et al. 2016) 1 15 1.00 0.00 8

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
metU tRNA Show interaction Show interaction Show interaction