RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

nadE.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
nadE.5UTR EG10663.5UTR 5UTR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 2 125 0.00 -0.50 5
Stat. Phase (Melamed et al. 2016) 1 47 0.00 -1.00 4
Iron Limitation (Melamed et al. 2016) 2 415 0.00 -0.50 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
chiX sRNA Show interaction
cyaR sRNA Show interaction Show interaction Show interaction
nadE.cho.IGR IGR Show interaction