RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

aceF.lpd.IGT

Flanking gene IDs:

  • EG10025
  • EG10543

Summary:

Name ID Genomic annotation Chromosome Strand
aceF.lpd.IGT EG10025.EG10543.IGT IGT chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Stat. Phase (Melamed et al. 2016) 1 48 0.00 -1.00 4
Iron Limitation (Melamed et al. 2016) 2 88 0.00 -0.50 4

Interaction table:

Name Genomic annotation Stationary Phase Iron Limitation
cyaR sRNA Show interaction
nanT.nanA.IGT IGT Show interaction
spf sRNA Show interaction