RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

yhcN

Summary:

Name ID Genomic annotation Chromosome Strand
yhcN G7683 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 26 1.00 0.00 8
Stat. Phase (Melamed et al. 2016) 1 42 1.00 0.00 8
Iron Limitation (Melamed et al. 2016) 2 117 0.50 0.00 8

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
ompC.5UTR 5UTR Show interaction Show interaction Show interaction
spf sRNA Show interaction