RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

spf - nanC.5UTR interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
spf nanC.5UTR sRNA 5UTR chr + 4049897 4049959 chr - 4539489 4539647 272 32.6
nanC.5UTR spf 5UTR sRNA chr - 4539499 4539676 chr + 4049926 4050007 102 10.9

spf reads

nanC.5UTR reads