RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

talB

Summary:

Name ID Genomic annotation Chromosome Strand
talB EG11556 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 31 0.00 -1.00 2
Stat. Phase (Melamed et al. 2016) 1 15 0.00 -1.00 3
Iron Limitation (Melamed et al. 2016) 3 197 0.33 0.00 3

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arcZ sRNA Show interaction
cyaR sRNA Show interaction
hupB.5UTR 5UTR Show interaction Show interaction
spf sRNA Show interaction