RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

sdhC.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
sdhC.5UTR EG10933.5UTR 5UTR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 16 0.00 -1.00 4
Stat. Phase (Melamed et al. 2016) 1 71 0.00 -1.00 3
Iron Limitation (Melamed et al. 2016) 1 243 0.00 -1.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
micA sRNA Show interaction
ryhB sRNA Show interaction
spf sRNA Show interaction