RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

ycfJ

Summary:

Name ID Genomic annotation Chromosome Strand
ycfJ EG12444 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 55 1.00 0.00 7
Stat. Phase (Melamed et al. 2016) 1 83 1.00 0.00 7
Iron Limitation (Melamed et al. 2016) 1 60 1.00 0.00 7

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
spf sRNA Show interaction Show interaction Show interaction