RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

spf - slyB.5UTR interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
spf slyB.5UTR sRNA 5UTR chr + 4049898 4049945 chr + 1719801 1719874 13 15.3
slyB.5UTR spf 5UTR sRNA chr + 1719762 1719786 chr + 4049929 4049966 45 148.0
slyB.5UTR spf 5UTR sRNA chr + 1719775 1719783 chr + 4049986 4050007 12 9.4

spf reads

slyB.5UTR reads