RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

pspG.qor.IGR

Flanking gene IDs:

  • EG11933
  • EG11492

Summary:

Name ID Genomic annotation Chromosome Strand
pspG.qor.IGR EG11933.EG11492.IGR IGR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 286 1.00 0.00 4
Stat. Phase (Melamed et al. 2016) 1 31 1.00 0.00 4
Iron Limitation (Melamed et al. 2016) 1 63 1.00 0.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
spf sRNA Show interaction Show interaction Show interaction