RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

lspA.fkpB.IGT

Flanking gene IDs:

  • EG10548
  • EG11080

Summary:

Name ID Genomic annotation Chromosome Strand
lspA.fkpB.IGT EG10548.EG11080.IGT IGT chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 20 0.00 -1.00 3
Iron Limitation (Melamed et al. 2016) 1 20 0.00 -1.00 6

Interaction table:

Name Genomic annotation Exponential Phase Iron Limitation
spf sRNA Show interaction Show interaction