RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

yejG.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
yejG.5UTR EG12042.5UTR 5UTR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 67 0.00 -1.00 3
Stat. Phase (Melamed et al. 2016) 1 55 0.00 -1.00 5
Iron Limitation (Melamed et al. 2016) 2 134 0.00 -0.50 3

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arcZ sRNA Show interaction Show interaction
omrB sRNA Show interaction Show interaction