RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

omrB - csgD.5UTR interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
omrB csgD.5UTR sRNA 5UTR chr - 2976380 2976386 chr - 1103195 1103288 40 26.6
csgD.5UTR omrB 5UTR sRNA chr - 1103279 1103312 chr - 2976304 2976364 30 6.3

omrB reads

csgD.5UTR reads