RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

hflX

Summary:

Name ID Genomic annotation Chromosome Strand
hflX EG10437 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 250 0.00 -1.00 7
Stat. Phase (Melamed et al. 2016) 4 2097 0.25 0.00 7
Iron Limitation (Melamed et al. 2016) 1 675 0.00 -1.00 7

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cpxP.3UTR 3UTR Show interaction
cyaR sRNA Show interaction Show interaction Show interaction
omrA sRNA Show interaction
omrB sRNA Show interaction