RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

ibpB

Summary:

Name ID Genomic annotation Chromosome Strand
ibpB EG11535 CDS chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 2 69 1.00 0.50 7
Stat. Phase (Melamed et al. 2016) 1 34 1.00 0.00 4
Iron Limitation (Melamed et al. 2016) 2 332 1.00 0.50 7

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
fecA.5UTR 5UTR Show interaction
mcaS sRNA Show interaction Show interaction Show interaction
rne CDS Show interaction