RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

insL-1.AS

Summary:

Name ID Genomic annotation Chromosome Strand
insL-1.AS G6083.AS AS chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 3 48 1.00 0.67 6
Stat. Phase (Melamed et al. 2016) 1 23 1.00 0.00 6
Iron Limitation (Melamed et al. 2016) 2 59 0.50 0.00 6

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cpxP.3UTR 3UTR Show interaction
cyaR sRNA Show interaction
fepD.5UTR 5UTR Show interaction
insH-1 CDS Show interaction
rpsJ.5UTR 5UTR Show interaction
yieE CDS Show interaction