RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

cyaR - smpB interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
smpB cyaR CDS sRNA chr + 2754880 2754974 chr + 2167137 2167201 300 18.7
smpB cyaR CDS sRNA chr + 2754831 2754878 chr + 2167136 2167200 35 5.2
cyaR smpB sRNA CDS chr + 2167113 2167165 chr + 2754919 2754973 39 3.9

cyaR reads

smpB reads