RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

hisQ.hisJ.IGT

Flanking gene IDs:

  • EG12125
  • EG12124

Summary:

Name ID Genomic annotation Chromosome Strand
hisQ.hisJ.IGT EG12125.EG12124.IGT IGT chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 66 0.00 -1.00 4
Stat. Phase (Melamed et al. 2016) 2 441 0.50 0.00 4
Iron Limitation (Melamed et al. 2016) 1 483 0.00 -1.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cyaR sRNA Show interaction
gcvB sRNA Show interaction Show interaction Show interaction