RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

pgpB

Summary:

Name ID Genomic annotation Chromosome Strand
pgpB EG10705 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 48 0.00 -1.00 5
Stat. Phase (Melamed et al. 2016) 1 100 0.00 -1.00 5
Iron Limitation (Melamed et al. 2016) 1 65 0.00 -1.00 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cyaR sRNA Show interaction Show interaction Show interaction